PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G22650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 125aa    MW: 13306.1 Da    PI: 6.7597
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G22650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.52.5e-3491111100
           DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +CaaC++++r +C+++C+lapyfpa++p++f++++ l+G++ +l+ l+a+  ++ +r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++k
  ORUFI01G22650.1   9 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLYGVDGILRRLEAAgpDPGTRRATMASIVFVSDARAADPVHGAYGVIRNLQQELASVK 102
                      7*********9***************************************766667************************************** PP

           DUF260  92 aelallkee 100
                      ae+a+++++
  ORUFI01G22650.1 103 AEIAAIRQK 111
                      ****99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0218112IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-289109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MADPTPPPPC AACAHQGRPS CPAGCPLAPY FPADRPERFE YANLLYGVDG ILRRLEAAGP  60
DPGTRRATMA SIVFVSDARA ADPVHGAYGV IRNLQQELAS VKAEIAAIRQ KQQQAQPPPP  120
PEDGH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640499.18e-86PREDICTED: LOB domain-containing protein 22
TrEMBLA0A0E0FNC49e-86A0A0E0FNC4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MY999e-86A0A0E0MY99_ORYRU; Uncharacterized protein
TrEMBLA2WRM59e-86A2WRM5_ORYSI; Putative uncharacterized protein
TrEMBLA2ZUK59e-86A2ZUK5_ORYSJ; Os01g0571800 protein
STRINGBGIOSGA001368-PA3e-85(Oryza sativa Indica Group)
STRINGBGIOSGA001369-PA3e-85(Oryza sativa Indica Group)
STRINGLOC_Os01g39070.13e-85(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153751118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-18LOB domain-containing protein 22